Package: CHMM 0.1.1

CHMM: Coupled Hidden Markov Models

An exact and a variational inference for coupled Hidden Markov Models applied to the joint detection of copy number variations.

Authors:Xiaoqiang Wang [aut], Julie Aubert [aut, cre]

CHMM_0.1.1.tar.gz
CHMM_0.1.1.zip(r-4.5)CHMM_0.1.1.zip(r-4.4)CHMM_0.1.1.zip(r-4.3)
CHMM_0.1.1.tgz(r-4.5-x86_64)CHMM_0.1.1.tgz(r-4.5-arm64)CHMM_0.1.1.tgz(r-4.4-x86_64)CHMM_0.1.1.tgz(r-4.4-arm64)CHMM_0.1.1.tgz(r-4.3-x86_64)CHMM_0.1.1.tgz(r-4.3-arm64)
CHMM_0.1.1.tar.gz(r-4.5-noble)CHMM_0.1.1.tar.gz(r-4.4-noble)
CHMM_0.1.1.tgz(r-4.4-emscripten)CHMM_0.1.1.tgz(r-4.3-emscripten)
CHMM.pdf |CHMM.html✨
CHMM/json (API)

# Install 'CHMM' in R:
install.packages('CHMM', repos = c('https://julieaubert.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/julieaubert/chmm/issues

Datasets:
  • toydata - Toy example - observations for 5 correlated samples.
  • toystatus - Toy example - status for 5 correlated samples.

On CRAN:

Conda:

3.85 score 7 stars 2 scripts 218 downloads 2 mentions 11 exports 1 dependencies

Last updated 3 years agofrom:cf283a7e25. Checks:12 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 10 2025
R-4.5-win-x86_64OKMar 10 2025
R-4.5-mac-x86_64OKMar 10 2025
R-4.5-mac-aarch64OKMar 10 2025
R-4.5-linux-x86_64OKMar 10 2025
R-4.4-win-x86_64OKMar 10 2025
R-4.4-mac-x86_64OKMar 10 2025
R-4.4-mac-aarch64OKMar 10 2025
R-4.4-linux-x86_64OKMar 10 2025
R-4.3-win-x86_64OKMar 10 2025
R-4.3-mac-x86_64OKMar 10 2025
R-4.3-mac-aarch64OKMar 10 2025

Exports:BackwardRCHMM_EMCHMM_VEMclustersegcoupledHMMExpGridForwardRinit.EMinit.VEMviterbi_algoWl

Dependencies:mclust