{
  "_id": "6a6061a514e95619b75d91d0",
  "Package": "CHMM",
  "Type": "Package",
  "Title": "Coupled Hidden Markov Models",
  "Version": "0.1.1",
  "Authors@R": "c(\nperson(\"Xiaoqiang\", \"Wang\", email = \"xiaoqiang.wang@sdu.edu.cn\", role = \"aut\"),\nperson(\"Julie\", \"Aubert\", email = \"julie.aubert@agroparistech.fr\", role = c(\"aut\",\"cre\"))\n)",
  "Description": "An exact and a variational inference for coupled Hidden\nMarkov Models applied to the joint detection of copy number\nvariations.",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "6.0.1",
  "URL": "http://github.com/julieaubert/CHMM",
  "BugReports": "http://github.com/julieaubert/CHMM/issues",
  "Repository": "https://julieaubert.r-universe.dev",
  "Date/Publication": "2022-09-12 12:51:41 UTC",
  "RemoteUrl": "https://github.com/julieaubert/chmm",
  "RemoteRef": "HEAD",
  "RemoteSha": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-22 06:17:50 UTC",
    "User": "root"
  },
  "Author": "Xiaoqiang Wang [aut],\nJulie Aubert [aut, cre]",
  "Maintainer": "Julie Aubert <julie.aubert@agroparistech.fr>",
  "_user": "julieaubert",
  "_type": "src",
  "_file": "CHMM_0.1.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/bf463553112dfb2c7a228264cd2d5a7b7d5d7d8a4144b1e7f1b6ce92d67496f8",
  "_filesize": 151439,
  "_sha256": "bf463553112dfb2c7a228264cd2d5a7b7d5d7d8a4144b1e7f1b6ce92d67496f8",
  "_expires": "2026-10-30T06:22:27.000Z",
  "_created": "2026-07-22T06:17:50.000Z",
  "_published": "2026-07-22T06:22:29.406Z",
  "_jobs": [
    {
      "job": 88847167377,
      "time": 114,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8520142467"
    },
    {
      "job": 88847167318,
      "time": 112,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8520141975"
    },
    {
      "job": 88847167362,
      "time": 115,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8520142583"
    },
    {
      "job": 88847167311,
      "time": 102,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8520138657"
    },
    {
      "job": 88847167383,
      "time": 82,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8520132532"
    },
    {
      "job": 88847167399,
      "time": 239,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8520182030"
    },
    {
      "job": 88847167355,
      "time": 117,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8520143001"
    },
    {
      "job": 88847167387,
      "time": 162,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8520157807"
    },
    {
      "job": 88846783362,
      "time": 150,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8520106790"
    },
    {
      "job": 88847167354,
      "time": 106,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8520140032"
    },
    {
      "job": 88847167303,
      "time": 96,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8520137046"
    },
    {
      "job": 88847167325,
      "time": 69,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8520129432"
    },
    {
      "job": 88847167322,
      "time": 90,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8520135320"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164",
  "_status": "success",
  "_upstream": "https://github.com/julieaubert/chmm",
  "_commit": {
    "id": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
    "author": "julieaubert <julie.aubert@inrae.fr>",
    "committer": "julieaubert <julie.aubert@inrae.fr>",
    "message": "Add reference and correction of a typo\n",
    "time": 1662987101
  },
  "_maintainer": {
    "name": "Julie Aubert",
    "email": "julie.aubert@agroparistech.fr",
    "login": "julieaubert",
    "description": "",
    "uuid": 23551715
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "mclust",
      "role": "Imports"
    }
  ],
  "_owner": "julieaubert",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 7,
  "_contributors": [
    {
      "user": "julieaubert",
      "count": 9,
      "uuid": 23551715
    }
  ],
  "_userbio": {
    "uuid": 23551715,
    "type": "user",
    "name": "Aubert Julie",
    "followers": 12
  },
  "_downloads": {
    "count": 205,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CHMM"
  },
  "_mentions": 2,
  "_devurl": "https://github.com/julieaubert/chmm",
  "_searchresults": 12,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/CHMM.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/julieaubert/chmm",
  "_realowner": "julieaubert",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2017-04-19"
    },
    {
      "version": "0.1.1",
      "date": "2017-09-29"
    }
  ],
  "_exports": [
    "BackwardR",
    "CHMM_EM",
    "CHMM_VEM",
    "clusterseg",
    "coupledHMM",
    "ExpGrid",
    "ForwardR",
    "init.EM",
    "init.VEM",
    "viterbi_algo",
    "Wl"
  ],
  "_datasets": [
    {
      "name": "toydata",
      "title": "Toy example - observations for 5 correlated samples.",
      "object": "toyexample",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "Sample_5",
        "Sample_7",
        "Sample_2",
        "Sample_9",
        "Sample_1"
      ],
      "rows": 1000,
      "table": true,
      "tojson": true
    },
    {
      "name": "toystatus",
      "title": "Toy example - status for 5 correlated samples.",
      "object": "toyexample",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "Sample_5",
        "Sample_7",
        "Sample_2",
        "Sample_9",
        "Sample_1"
      ],
      "rows": 1000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "CHMM_EM",
      "title": "Perform exact inference of coupled hidden markov models.",
      "topics": [
        "CHMM_EM"
      ]
    },
    {
      "page": "CHMM_VEM",
      "title": "Perform variational inference of coupled Hidden Markov Models.",
      "topics": [
        "CHMM_VEM"
      ]
    },
    {
      "page": "clusterseg",
      "title": "Summarize the results of the coupled HMM.",
      "topics": [
        "clusterseg"
      ]
    },
    {
      "page": "coupledHMM",
      "title": "Perform inference of coupled hidden markov models.",
      "topics": [
        "coupledHMM"
      ]
    },
    {
      "page": "init.EM",
      "title": "Initialization step of the 'CHMM_EM' function.",
      "topics": [
        "init.EM"
      ]
    },
    {
      "page": "init.VEM",
      "title": "Initialization step of the 'CHMM_VEM' function.",
      "topics": [
        "init.VEM"
      ]
    },
    {
      "page": "toydata",
      "title": "Toy example - observations for 5 correlated samples.",
      "topics": [
        "toydata"
      ]
    },
    {
      "page": "toystatus",
      "title": "Toy example - status for 5 correlated samples.",
      "topics": [
        "toystatus"
      ]
    }
  ],
  "_readme": "https://github.com/julieaubert/chmm/raw/HEAD/README.md",
  "_rundeps": [
    "mclust"
  ],
  "_score": 3.924279286061882,
  "_indexed": true,
  "_nocasepkg": "chmm",
  "_universes": [
    "julieaubert"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-07-22T06:19:49.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/b9348081d12d6b1061cf501c41eae66bb302211da4b08971e9b002dcdc13ca18",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-07-22T06:19:43.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/871504ee61538c8c9547c5c68069bff5b0c563eec0dc031c2b98490bef2848c3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-07-22T06:19:50.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/7acc46790c1f8eaea325bacbe26976cca6e6460ff7b1885dec4062c282315995",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-07-22T06:19:34.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/57c5da7d9e78a4958af7995c7b68f5f77762c1b1d47a12ecb5f6043c126d3877",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-07-22T06:19:11.000Z",
      "arch": "aarch64",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/a02610a3051e4a3b35142ea58ac0b0a5727062458db03c63b8781b02a04d5123",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-07-22T06:21:28.000Z",
      "arch": "x86_64",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/925213ffc749a30a442d0aaa79a1faa05814761945ec74883c8dfcaf92d7c61c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-07-22T06:19:38.000Z",
      "arch": "aarch64",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/a41710e9a216225f5d4e90793ff7f15ddcdf7ab96c3dbcd220f8be07b3d98970",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-07-22T06:20:27.000Z",
      "arch": "x86_64",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/4085d6feeff13b9370db531979b85a4c0711797ff5ee889a9b368d6c47f20c2b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-07-22T06:19:48.000Z",
      "arch": "emscripten",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/e1f3c614efd3bd3b8f15d67beadffd7061bbdcfd16384e16c039f209b6974a4c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-22T06:19:11.000Z",
      "arch": "x86_64",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/fbd00aac7fd972c6d81e82ae9bb713e9df2cf327c75e37a27fc28bd53868d112",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-22T06:18:50.000Z",
      "arch": "x86_64",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/4f31f4c63dadba8a2be6055f67ff516c404a3b549d5682b149c3297884157e4a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-07-22T06:19:09.000Z",
      "arch": "x86_64",
      "commit": "cf283a7e25c6af8ce6f972c630b46a7da310e386",
      "fileid": "https://r2.ropensci.org/f53746f89af517a238d49bb1c7fcf84fe404330815aaf33afa7ea0c582993d6d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/julieaubert/actions/runs/29896183164"
    }
  ]
}